Bioinformatic and Statistical Analysis of Microbiome Data From Raw Sequences to Advanced Modeling with QIIME 2 and R

This unique book addresses the bioinformatic and statistical modelling and also the analysis of microbiome data using cutting-edge QIIME 2 and R software. It covers core analysis topics in both bioinformatics and statistics, which provides a complete workflow for microbiome data analysis: from raw s...

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Bibliographic Details
Main Authors: Xia, Yinglin, Sun, Jun (Author)
Format: eBook
Language:English
Published: Cham Springer International Publishing 2023, 2023
Edition:1st ed. 2023
Subjects:
Online Access:
Collection: Springer eBooks 2005- - Collection details see MPG.ReNa
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245 0 0 |a Bioinformatic and Statistical Analysis of Microbiome Data  |h Elektronische Ressource  |b From Raw Sequences to Advanced Modeling with QIIME 2 and R  |c by Yinglin Xia, Jun Sun 
250 |a 1st ed. 2023 
260 |a Cham  |b Springer International Publishing  |c 2023, 2023 
300 |a XXVI, 703 p. 75 illus., 59 illus. in color  |b online resource 
505 0 |a Chapter 1. Introduction to Linux and Unix -- Chapter 2. Introduction to R, Rstudio -- Chapter 3. Bioinformatic Analysis of Next-Generation Sequencing -- Chapter 4. Bioinformatic Analysis of Metagenomics -- Chapter 5. Alpha Diversity -- Chapter 6. Beta Diversity -- Chapter 7. Differential Abundance Analysis -- Chapter 8. Analyzing Zero-Inflated Microbiome Data -- Chapter 9. Compositional Analysis of Microbiome Data -- Chapter 10. Longitudinal Data Analysis of Microbiome -- Chapter 11. Meta-analysis of Microbiome Data (optional) 
653 |a Big data 
653 |a Bioinformatics 
653 |a Biomedical engineering 
653 |a Biostatistics 
653 |a Biomedical Engineering and Bioengineering 
653 |a Biotechnology 
653 |a Big Data 
653 |a Mathematical statistics / Data processing 
653 |a Statistics and Computing 
653 |a Biometry 
700 1 |a Sun, Jun  |e [author] 
041 0 7 |a eng  |2 ISO 639-2 
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028 5 0 |a 10.1007/978-3-031-21391-5 
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082 0 |a 570.285 
520 |a This unique book addresses the bioinformatic and statistical modelling and also the analysis of microbiome data using cutting-edge QIIME 2 and R software. It covers core analysis topics in both bioinformatics and statistics, which provides a complete workflow for microbiome data analysis: from raw sequencing reads to community analysis and statistical hypothesis testing. It includes real-world data from the authors’ research and from the public domain, and discusses the implementation of QIIME 2 and R for data analysis step-by-step. The data as well as QIIME 2 and R computer programs are publicly available, allowing readers to replicate the model development and data analysis presented in each chapter so that these new methods can be readily applied in their own research. Bioinformatic and Statistical Analysis of Microbiome Data is an ideal book for advanced graduate students and researchers in the clinical, biomedical, agricultural, and environmental fields, as well as those studying bioinformatics, statistics, and big data analysis