Polyploidy Methods and Protocols
This volume provides protocols on evidence for polyploidy and how it can be unveiled. Chapters guide readers through evolutionary experiments, measure effects of polyploidy, evidence for (remnants of) ancient WGDs, models of chromosome number evolution, population genomics approaches to study polypl...
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| Format: | eBook |
| Language: | English |
| Published: |
New York, NY
Humana
2023, 2023
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| Edition: | 1st ed. 2023 |
| Series: | Methods in Molecular Biology
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| Subjects: | |
| Online Access: | |
| Collection: | Springer eBooks 2005- - Collection details see MPG.ReNa |
Table of Contents:
- Beyond Transcript Concentrations: Quantifying Polyploid Expression Responses Per Biomass, Per Genome, and Per Cell with RNA-Seq
- A Robust Methodology for Assessing Homoeolog-Specific Expression
- Analyzing Autopolyploid Genetic Data Using GenoDive
- Inference of Polyploid Origin and Inheritance Mode from Population Genomic Data
- Population Genomic Analysis of Diploid - Autopolyploid Species
- Inferring the Demographic History and Inheritance Mode of Tetraploid Species using ABC
- Studying Whole-Genome Duplication Using Experimental Evolution of Chlamydomonas
- Studying Whole-Genome Duplication Using Experimental Evolution of Spirodela polyrhiza
- Experimental Approaches to Generate and Isolate Human Tetraploid Cells
- Measuring Cellular Ploidy In Situ by Light Microscopy
- Using Mosaic Cell Labelling to Visualize Polyploid Cells in the Drosophila brain
- Sequencing and Assembly of Polyploid Genomes
- Genome Editing by CRISPR/Cas9 in Polyploids
- Developing a CRISPR system in non-genetic model polyploids
- Efficiently Editing Multiple Duplicated Homeologs and Alleles for Recurrent Polyploids.
- Inference of Ancient Polyploidy from Genomic Data
- Navigating the CoGe Online Software Suite for Polyploidy Research
- Inference of Ancient Polyploidy Using Transcriptome Data
- POInT: Modeling Polyploidy in the Era of Ubiquitous Genomics
- Applying Machine Learning to Classify the Origins of Gene Duplications
- Phasing gene copies into polyploid subgenomes using a Bayesian phylogeneticapproach
- Constraining Whole-Genome Duplication Events in Geological Time
- SCORPiOs, a Novel Method to Reconstruct Gene Phylogenies in the Context of a Known WGD Event
- Inferring Chromosome Number Changes Along a Phylogeny Using chromEvol
- PURC v2.0: A Program for Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem
- Analyses of Genome Regulatory Evolution Following Whole-Genome Duplication Using the Phylogenetic EVE Model