Yeast Functional Genomics Methods and Protocols
This volume provides a collection of protocols for the study of DNA-DNA contact maps, replication profiles, transcription rates, RNA secondary structures, protein-RNA interactions, ribosome profiling and quantitative proteomes and metabolomes. Written for the Methods in Molecular Biology series, cha...
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| Format: | eBook |
| Language: | English |
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New York, NY
Springer New York
2016, 2016
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| Edition: | 1st ed. 2016 |
| Series: | Methods in Molecular Biology
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| Subjects: | |
| Online Access: | |
| Collection: | Springer eBooks 2005- - Collection details see MPG.ReNa |
Table of Contents:
- Using RNA-seq for Analysis of Differential Gene Expression in Fungal Species
- Enhancing Structural Annotation of Yeast Genomes with RNA-Seq Data
- Pathogen Gene Expression Profiling During Infection Using a Nanostring Ncounter Platform
- Comparative Transcriptomics in Yeasts
- Mapping the Transcriptome-Wide Landscape of RBP Binding sites using gPAR-CLIP-seq: Experimental Procedures
- Mapping the Transcriptome-wide Landscape of RBP Binding Sites using gPAR-CLIP-seq: Bioinformatic Analysis
- Translation Analysis at the Genome Scale by Ribosome Profiling
- Biotin-Genomic Run-on (Bio-GRO): A High-Resolution Method for the Analysis of Nascent Transcription in Yeast
- Genome-wide Probing of RNA Structures in Vitro Using Nucleases and Deep Sequencing
- Genome-wide Chromatin Immunoprecipitation in Candida albicans and other Yeasts
- ChIPseq in Yeast Species: from Chromatin Immumoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses
- Systematic Determination of Transcription factor DNA-binding Specificities in Yeast
- Generation and Analysis of Chromosomal Contact Maps of Yeast Species
- A Versatile Procedure to Generate Genome-Wide Spatio-Temporal Program of Replication in Yeast Species
- Single-Step Affinity Purification (ssAP) and Mass Spectrometry of Macromolecular Complexes in the Yeast S. cerevisiae
- Label-Free Quantitative Proteomics in Yeast
- Profiling of Yeast Lipids by Shotgun Lipidomics
- Identification of Links between Cellular Pathways by Genetic Interaction Mapping (GIM)
- On The Mapping of Epistatic Genetic Interactions in Natural Isolates: Combining Classical Genetics and Genomics
- Experimental Evolution and Resequencing Analysis of Yeast
- Reconstruction and Analysis of the Evolution of Modular Transcriptional Regulatory Programs using Arboretum
- Predicting Gene and Genomic Regulation in Saccharomyces cerevisiae, using the YEASTRACT Database: A Step By Step Guided Analysis