Analysis and Enumeration Algorithms for Biological Graphs

all maximal directed acyclic subgraphs of a graph G whose sources and targets belong to a predefined subset of the vertices, is on the other hand an example of an enumeration problem with an exponential number of solutions, that can be solved by using a non trivial brute-force approach. Given a meta...

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Bibliographic Details
Main Author: Marino, Andrea
Format: eBook
Language:English
Published: Paris Atlantis Press 2015, 2015
Edition:1st ed. 2015
Series:Atlantis Studies in Computing
Subjects:
Online Access:
Collection: Springer eBooks 2005- - Collection details see MPG.ReNa
Table of Contents:
  • Introduction
  • Enumeration Algorithms
  • An Application: Biological Graph Analysis
  • Telling Stories: Enumerating maximal directed acyclic graphs with constrained set of sources and targets
  • Enumerating bubbles: listing pairs of vertex disjoint paths
  • Enumerating Cycles and (s,t)-Paths in Undirected Graphs
  • Enumerating Diametral and Radial vertices and computing Diameter and Radius of a graph
  • Conclusions