Tiling Arrays Methods and Protocols

 In Tiling Arrays: Methods and Protocols,  expert researchers in the field detail many of the methods which are now commonly used to study tiling microarrays in genomic discovery . These include methods and applications for transcriptional regulation, expression, genetic and epigenetic regulation, a...

Full description

Bibliographic Details
Other Authors: Lee, Tin-Lap (Editor), Shui Luk, Alfred Chun (Editor)
Format: eBook
Language:English
Published: Totowa, NJ Humana Press 2013, 2013
Edition:1st ed. 2013
Series:Methods in Molecular Biology
Subjects:
Online Access:
Collection: Springer eBooks 2005- - Collection details see MPG.ReNa
Table of Contents:
  • A Brief Introduction to Tiling Microarrays: Principles, Concepts, and Applications
  • Design of Tiling Arrays and their Application to Bacterial Transcriptome Analysis
  • Transcript Profiling in Arabidopsis with Genome Tiling Microarrays
  • Genome-wide Analysis of Transcription Factor Binding Sites in Skeletal Muscle Cells using ChIP-seq
  • Analysis of Allele-Specific Gene Expression Using a Target-Oriented Tiling Microarray Assay
  • Detection of Epigenetic Alterations Using Tiling Arrays
  • Investigating Gene Promoter Methylation in a Mouse Model of Status Epilepticus
  • Integrative Analysis of ChIP-chip and ChIP-seq Dataset
  • HAT: A Novel Statistical Approach to Discover Functional Regions in the Genome
  • Inference of Alternative Splicing from Tiling Array Data
  • Analysis of in vivo Occupancy of Aebp1, a Transcription Factor, using High Resolution Tiling Array
  • Application of the Simple and Efficient MPeak Modeling in Binding Peak Identification in CHIP-CHIP Studies
  •  Evaluation of MeDIP-chip in the Context of Whole Genome Bisulphite Sequencing (WGBS-seq) in Arabidopsis
  • Mapping Genomic Features of Tiling Microarray Data by TileMapper