Algorithms in Bioinformatics 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings
| Other Authors: | , |
|---|---|
| Format: | eBook |
| Language: | English |
| Published: |
Berlin, Heidelberg
Springer Berlin Heidelberg
2005, 2005
|
| Edition: | 1st ed. 2005 |
| Series: | Lecture Notes in Bioinformatics
|
| Subjects: | |
| Online Access: | |
| Collection: | Springer eBooks 2005- - Collection details see MPG.ReNa |
Table of Contents:
- Expression
- Spectral Clustering Gene Ontology Terms to Group Genes by Function
- Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: A Search Pruned by Expression
- Clustering Gene Expression Series with Prior Knowledge
- A Linear Time Biclustering Algorithm for Time Series Gene Expression Data
- Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds
- Phylogeny
- A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem
- Computing the Quartet Distance Between Trees of Arbitrary Degree
- Using Semi-definite Programming to Enhance Supertree Resolvability
- An Efficient Reduction from Constrained to Unconstrained Maximum Agreement Subtree
- Pattern Identification in Biogeography
- On the Complexity of Several Haplotyping Problems
- A Hidden Markov Technique for Haplotype Reconstruction
- Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
- Ortholog Clustering on a Multipartite Graph
- Linear Time Algorithm for Parsing RNA Secondary Structure
- A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance
- Structure
- Optimal Protein Threading by Cost-Splitting
- Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment
- Rotamer-Pair Energy Calculations Using a Trie Data Structure
- Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity
- The Main Structural Regularities of the Sandwich Proteins
- Discovery of Protein Substructures in EM Maps
- Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event
- Networks
- A Faster Algorithm for Detecting Network Motifs
- Reaction Motifs in Metabolic Networks
- Reconstructing Metabolic Networks Using Interval Analysis
- Genome Rearrangements
- A 1.375-Approximation Algorithm for Sorting by Transpositions
- A New Tight Upper Bound on the Transposition Distance
- Perfect Sorting by Reversals Is Not Always Difficult
- Minimum Recombination Histories by Branch and Bound
- Sequences
- A Unifying Framework for Seed Sensitivity and Its Application to Subset Seeds
- Generalized Planted (l,d)-Motif Problem with Negative Set
- Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)
- The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity
- Multiple Structural RNA Alignmentwith Lagrangian Relaxation