1 Table of Contents: “... Data Analysis for Transcriptome Profiling -- Pathway and Network Analysis of Differentially Expressed...”

2 Table of Contents: “... -- Genomic Outlier Detection in High-throughput Data Analysis -- Impact of Experimental Noise and Annotation...”

3 Table of Contents: “... Extracellular mRNAs -- Microarray Analysis of mRNAs: Experimental Design and Data Analysis Fundamentals...”

4 Table of Contents: “... -- Inference of Alternative Splicing from Tiling Array Data -- Analysis of in vivo Occupancy of Aebp1, a...”

5 Table of Contents: “... -- Live Cell Microscopy-Based RNAi Screening in the Moss Physcomitrella patens -- Data Analysis For High...”

6 Table of Contents: “... Tools for qPCR Assay Design and Data Analysis -- RNA Structure Prediction -- In Silico Prediction...”

7 Table of Contents: “... to Illumina BeadChip Data Analysis.- Microdroplet PCR for Highly-Multiplexed Targeted Bisulfite Sequencing...”

8 Table of Contents: “... Circular RNA Analytics from RNA-seq Data -- Genome-wide circRNA Profiling from RNA-seq Data -- Analysis...”

9 Table of Contents: “... Proteins in Drosophila Cells -- High-Throughput Single-Cell RNA Sequencing and Data Analysis -- Functional...”

10 Table of Contents: “... Reference Genes to Global Mean Normalization -- miRNA Data Analysis: Next-Gen Sequencing -- Integrated miRNA...”

11 Table of Contents: “... Resolution Using Iclip -- A Pipeline for PAR-CLIP Data Analysis -- Capture and Identification Of Mirna...”

12 “.... Detailed procedures and data analysis for phenotypes and ancestry are explored in Chapter 17-19. The last...”

13 Table of Contents: “... the Laboratory Protocol and Initial Downstream Data Analysis -- Generation of Whole Genome Bisulfite Sequencing...”