1 Table of Contents: “...: Challenges and Opportunities -- Computational Proteomics with Jupyter and Python -- The Galaxy Platform...”

2 Table of Contents: “... Analysis: A Step-by-Step Overview -- RNA-Seq Data Analysis in Galaxy -- RAP: A Web Tool for RNA-Seq Data...”

3 Table of Contents: “... of Proteins with Organic Compounds or Peptides Using GALAXY Web Servers -- Rosetta and the Design of Ligand...”

4 Table of Contents: “... Using EpiGRAPH and Galaxy -- Short Tandem Repeats and Genetic Variation -- Bioinformatic Tools...”

5 Table of Contents: “... with GalaxyHomomer Web Server -- Template-Based Modeling of Protein Complexes Using the PPI3D Web Server -- Protein...”

6 Table of Contents: “... GalaxyPepDock -- Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting...”

7 “... in managing the galaxy of information. It is now possible to view the different information’s in a systems...”

8 Table of Contents: “... -- Designing an In Silico Strategy to Select Tissue-Leakage Biomarkers Using the Galaxy Framework...”

9 Table of Contents: “... Multispecies Alignments Using Galaxy, Table Browser, and GALA -- Comparative Promoter Analysis in Vertebrate...”