1 Table of Contents: “..., simulator & databases -- Module and physical-quantity -- Mathematical expressions in a model -- Reuse...”

2 Table of Contents: “... by arabinose feed-forward loop -- Single input module (SIM) -- Dense overlapping regulons (DOR) -- Incoherent...”

3 Table of Contents: “... with disease risk -- Study designs -- Statistical modeling issues in the analysis of data -- Sample size...”

4 Table of Contents: “... structural changes and the enzymatic catalytic cycle similar? -- How are electrostatics modulated in enzyme...”

5 Table of Contents: “... interaction data and their quality -- Small worldness, hubs (date and party hubs, rich clubs) and modules...”

6 Table of Contents: “... residues -- Co-variation can modulate stability, but is not essential to specify a stable fold -- Structure...”

7 Table of Contents: “... to MTBE in gasoline -- Using a physiologically based toxicokinetic (PBTK) model of MTBE to estimate tissue...”

8 Table of Contents: “... modulators (PAMs, SAMs and NAMs) -- Allosteric two-state model and general operational model...”

9 Table of Contents: “... (MINDy) -- Multivariate dependency model -- Conditional interactions -- STK38 -- Top MYC modulators...”

10 Table of Contents: “... -- Pathway modeling -- Modulation of the notch pathway -- Altered transcripts -- Understand compound...”

11 Table of Contents: “...Definition of pharmacogenetics (PGx), pharmacokinetics and pharmacodynamics -- Modulation of PGx...”