Metagenomic Data Analysis
This volume describes different sequencing methods, pipelines and tools for metagenome data analyses. Chapters guide readers through quality control of raw sequence data, metagenomics databases for bacterial annotations such Greengenes, SILVA, RDP and GTDB, guide to 16S rRNA microbiome analysis and...
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| Format: | eBook |
| Language: | English |
| Published: |
New York, NY
Humana
2023, 2023
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| Edition: | 1st ed. 2023 |
| Series: | Methods in Molecular Biology
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| Subjects: | |
| Online Access: | |
| Collection: | Springer eBooks 2005- - Collection details see MPG.ReNa |
Table of Contents:
- From genomics to metagenomics in the era of recent sequencing technologies
- Quality Control in Metagenomics Data
- Metagenomics Databases for Bacteria
- Amplicon Sequencing Pipelines in Metagenomics
- A practical guide to 16S rRNA microbiome analysis in musculoskeletal disorders
- DIAMOND+MEGAN microbiome analysis
- Interactive Web-based Services for Metagenomic Data Analysis and Comparisons
- Application of High Throughput Sequencing (HTS) to Enhance the Well-being of an Endangered Species (Malayan tapir): Characterization of Gut Microbiome using MG-RAST
- Designing knowledge-based bioremediation strategies using metagenomics
- Nanopore sequencing techniques – A comparison of the MinKNOW and the Alignator sequencers
- MAIRA: protein-based analysis of MinION reads on a laptop
- Recovery and analysis of long read metagenome-assembled genomes
- Cloud Computing for Metagenomics: Building a personalised computational platform forpipeline analyses
- Artificial Intelligence in Medicine: Microbiome-based Machine Learning for Phenotypic Classification
- Tracking Antibiotic Resistance From the Environment to Human Health
- Targeted enrichment of low-abundance and uncharacterised taxon members in complex microbial community with primer-free FISH probes
- Assembly and Annotation of Viral Metagenomes from Short-Read Sequencing Data
- Assembly and Annotation of Viral Metagenomes from Short-Read Sequencing Data
- Metagenomics Data Visualisation using R
- Comprehensive guideline for microbiome analysis using R packages