Plant Comparative Genomics
This detailed book presents recent methodologies for the task of inspecting the genomic world of plants, extracting valuable information, and presenting it in a readable way. With a focus on bioinformatics tools, the volume explores phylogenetics and evolution, Omics analysis, as well as experimenta...
| Other Authors: | , , |
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| Format: | eBook |
| Language: | English |
| Published: |
New York, NY
Springer US
2022, 2022
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| Edition: | 1st ed. 2022 |
| Series: | Methods in Molecular Biology
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| Subjects: | |
| Online Access: | |
| Collection: | Springer eBooks 2005- - Collection details see MPG.ReNa |
Table of Contents:
- Orthology Prediction and Phylogenetic Analysis Methods in Plants
- Species Tree Inference with SNP Data
- High-Throughput Evolutionary Comparative Analysis of Long Intergenic Non-Coding RNAs in Multiple Organisms
- NGS-Indel Coder v2.0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data
- An SGSGeneloss-Based Method for Constructing a Gene Presence/Absence Table Using Mosdepth
- POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes
- Searching for Homologous Genes Using Daisychain
- Detecting MicroRNAs in Plant Genomes with miRkwood
- Pangenome Analysis of Plant Transcripts and Coding Sequences
- Metagenomics Bioinformatic Pipeline
- Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach
- Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants
- Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis
- Isolation of Boechera stricta Developing Embryos for Hi-C
- Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens
- Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-Aromatic Rice Germplasms
- Efficient Protein Extraction Protocols for NanoLC-MS/MS Proteomics Analysis of Plant Tissues with High Proteolytic Activity: A Case Study with Pineapple Pulp